ndexr - NDEx R client library

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Last updated 4 months ago

pathwaysdataimportnetwork

6.44 score 9 stars 38 scripts 208 downloads

RCX - R package implementing the Cytoscape Exchange (CX) format

Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.

Last updated 4 months ago

pathwaysdataimportnetwork

6.28 score 8 stars 1 dependents 10 scripts 189 downloads

mully - Create, Modify and Visualize Multi-Layered Networks

Allows the user to create graphs with multiple layers. The user can also modify the layers, the nodes, and the edges. The graph can also be visualized. Zaynab Hammoud and Frank Kramer (2018) <doi:10.3390/genes9110519>. More about multilayered graphs and their usage can be found in our review paper: Zaynab Hammoud and Frank Kramer (2020) <doi:10.1186/s41044-020-00046-0>.

Last updated 2 years ago

big-networksdata-visualizationgraph-theorygraphsigraphmultilayer-networksnode-colored-graphs

5.95 score 45 stars 6 scripts 258 downloads

rBiopaxParser - Parses BioPax files and represents them in R

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Last updated 4 months ago

datarepresentation

5.85 score 10 stars 7 scripts 396 downloads