RCX - R package implementing the Cytoscape Exchange (CX) format
Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.
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pathwaysdataimportnetwork
6.79 score 8 stars 1 dependents 16 scripts 418 downloadsndexr - NDEx R client library
This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.
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pathwaysdataimportnetwork
6.56 score 9 stars 51 scripts 403 downloadsrBiopaxParser - Parses BioPax files and represents them in R
Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.
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datarepresentation
6.32 score 10 stars 21 scripts 1.4k downloadsmully - Create, Modify and Visualize Multi-Layered Networks
Allows the user to create graphs with multiple layers. The user can also modify the layers, the nodes, and the edges. The graph can also be visualized. Zaynab Hammoud and Frank Kramer (2018) <doi:10.3390/genes9110519>. More about multilayered graphs and their usage can be found in our review paper: Zaynab Hammoud and Frank Kramer (2020) <doi:10.1186/s41044-020-00046-0>.
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big-networksdata-visualizationgraph-theorygraphsigraphmultilayer-networksnode-colored-graphs
5.95 score 45 stars 7 scripts 284 downloads